Implements phase A of the DESIGN_clustering.md design: a Dirichlet-process
mixture of per-position categoricals over the first 32 header bytes (257-symbol
alphabet) that clusters the binary/ pile by file format, plus signature
extraction and promotion nomination. All base-Julia (a Lanczos loggamma keeps
the Dirichlet-multinomial marginal dependency-free).
- src/cluster.jl: header_symbols feature extraction, collapsed Gibbs sampler
(phase A), sequential CRP-predictive assignment (phase B core), signatures/
promotion, and ARI/V-measure calibration metrics.
- bin/cluster_calibrate.jl: grid-tunes hyperparameters against magic-collapsed
ground truth and cross-checks a model-free NCD (gzip) baseline.
- FS_CLUSTER_*/FS_PROMOTE_* config knobs; wire cluster.jl into the module.
- Tests for the three DESIGN §10 assertions plus the model primitives.
Calibrated defaults (n=32, alpha=1.0, beta=0.1) recover known formats at
ARI 0.77 (0.885 excl. tar); docx+zip and the ELF family merge correctly and the
NCD baseline agrees. DESIGN §11 records the results and three assumptions the
data corrected (tar/ELF header-zero merge, the cold-start seeding deadlock, and
the Bernoulli signature / Occam-penalized restart scoring).
Text files sorted by stage 3 now flow onto a new work queue and worker
pool that enrich them with natural language (Languages.jl LanguageDetector:
name, ISO 639-3 code, confidence) and programming language (github-linguist),
writing a .meta.json sidecar to data/text_done/ like the stage-2 known-file
pipeline.
github-linguist reads the git blob of a path inside a repo, so untracked
data/ files are copied to /tmp (outside any repo, name preserved for
extension heuristics) before detection. Programming-language lookup is
best-effort (startup warning if missing, degraded/null on failure);
natural-language failure yields a degraded sidecar, not a quarantine.
Factored exiftool's timeout-kill into shared run_with_timeout and the
durable sidecar-first commit into commit_enriched!, both reused by stage 4.
Recovery re-drives data/text/; graceful drain closes the text queue after
its stage-3 producers finish.
The NUL-byte heuristic misfiled any non-ASCII UTF-8 text (accents, CJK,
emoji) as binary and let non-NUL control bytes through as text. is_binary
now calls a file text when its 8000-byte sniff window is valid UTF-8 with
no control bytes outside the text-safe set (tab/newline/CR/ESC/etc).
- trim_truncated_utf8 drops a multi-byte char split by the window edge so
it isn't mistaken for malformed bytes.
- NUL still classifies as binary (valid UTF-8 scalar, non-text control).
- Expanded tests: Unicode, ANSI logs, stray control byte, malformed UTF-8,
boundary-split char; updated README stage-3 description.
Unknown files are no longer terminal. Stage 1 now routes :unknown onto a
dedicated queue (with the same blocking backpressure as the known queue),
and a third worker pool sorts each file into data/binary/ or data/text/
using a NUL-byte sniff of the first 8000 bytes.
- content.jl: is_binary content sniff (stage 3)
- worker.jl: handle_unknown_job; stage-1 routes unknown with backpressure;
KNOWN_ENQUEUE_RETRY_SECONDS -> ROUTE_ENQUEUE_RETRY_SECONDS (serves both)
- config.jl: unknown_worker_count/queue_capacity, binary_dir, text_dir + env
- FileServer.jl: unknown queue, pool, stage-aware recovery, drain ordering
- tests for is_binary and handle_unknown_job; tmp_config isolates new dirs
- README: three-stage pipeline
Address code-review findings on the metadata pipeline:
- finalize_known! now fsyncs the sidecar bytes before the rename and
fsyncs done/ after, so the "file in done/ implies sidecar present"
invariant holds across power loss, not just process crashes. The
docstring previously claimed an fsync the code never performed.
- run_exiftool's timeout escalates SIGTERM -> (2s grace) -> SIGKILL, so
an exiftool that ignores SIGTERM can't pin a worker forever on
wait(proc). Previously the timeout sent only SIGTERM.
- Add test/ (48 tests) covering the correctness-critical paths:
sanitize_filename, normalize_metadata, degraded build_metadata,
real exiftool extraction, finalize_known! end-to-end, recover_dir!.
